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Updating HC integration tests because experimental, HC-specific annotations have been removed.

This commit is contained in:
Ryan Poplin 2012-11-26 12:20:07 -05:00
parent c3b7dd1374
commit 59cef880d1
1 changed files with 1 additions and 1 deletions
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2
protected/java/test/org/broadinstitute/sting/gatk/walkers/haplotypecaller/HaplotypeCallerIntegrationTest.java
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@ -72,7 +72,7 @@ public class HaplotypeCallerIntegrationTest extends WalkerTest {
@Test
public void HCTestProblematicReadsModifiedInActiveRegions() {
final String base = String.format("-T HaplotypeCaller -R %s -I %s", REF, privateTestDir + "haplotype-problem-4.bam") + " --no_cmdline_in_header -o %s -minPruning 3 -L 4:49139026-49139965";
final WalkerTestSpec spec = new WalkerTestSpec(base, Arrays.asList("788176e1717bd28fc7cbc8e3efbb6100"));
final WalkerTestSpec spec = new WalkerTestSpec(base, Arrays.asList("ec437d2d9f3ae07d155983be0155c8ed"));
executeTest("HCTestProblematicReadsModifiedInActiveRegions: ", spec);
}