diff --git a/public/packages/PicardPrivate.xml b/public/packages/PicardPrivate.xml
index 581c47979..a800294d6 100644
--- a/public/packages/PicardPrivate.xml
+++ b/public/packages/PicardPrivate.xml
@@ -12,15 +12,12 @@
       <class name="edu.mit.broad.picard.variation.KnownVariantCodecV2" />
       <class name="edu.mit.broad.picard.variation.KnownVariantCodec" />
       <class name="edu.mit.broad.picard.variation.KnownVariantFileHeader" />
-      <class name="edu.mit.broad.picard.variation.GenerateDbSnpFile" />
       <class name="edu.mit.broad.picard.variation.VariantType" />
       <class name="edu.mit.broad.picard.variation.ObsoleteKnownVariantCodecV1" />
       <class name="edu.mit.broad.picard.variation.AbstractKnownVariantCodec" />
       <class name="edu.mit.broad.picard.variation.KnownVariantIterator" />
       <class name="edu.mit.broad.picard.variation.KnownVariantCodecFactory" />
       <class name="edu.mit.broad.picard.variation.KnownVariant" />
-      <class name="edu.mit.broad.picard.variation.DbSnpFileReader" />
-      <class name="edu.mit.broad.picard.variation.DbSnpFileGenerator" />
       <class name="net.sf.picard.util.IlluminaUtil" />
       <class name="edu.mit.broad.picard.genotype.fingerprint.v2.FingerprintingSummaryMetrics" />
       <class name="edu.mit.broad.picard.genotype.concordance.DbSnpMatchMetrics" />
diff --git a/settings/repository/edu.mit.broad/picard-private-parts-2068.jar b/settings/repository/edu.mit.broad/picard-private-parts-2068.jar
deleted file mode 100644
index bb6805d8d..000000000
Binary files a/settings/repository/edu.mit.broad/picard-private-parts-2068.jar and /dev/null differ
diff --git a/settings/repository/edu.mit.broad/picard-private-parts-2125.jar b/settings/repository/edu.mit.broad/picard-private-parts-2125.jar
new file mode 100644
index 000000000..70c589572
Binary files /dev/null and b/settings/repository/edu.mit.broad/picard-private-parts-2125.jar differ
diff --git a/settings/repository/edu.mit.broad/picard-private-parts-2068.xml b/settings/repository/edu.mit.broad/picard-private-parts-2125.xml
similarity index 64%
rename from settings/repository/edu.mit.broad/picard-private-parts-2068.xml
rename to settings/repository/edu.mit.broad/picard-private-parts-2125.xml
index 1ce10c193..0758c94cd 100644
--- a/settings/repository/edu.mit.broad/picard-private-parts-2068.xml
+++ b/settings/repository/edu.mit.broad/picard-private-parts-2125.xml
@@ -1,3 +1,3 @@
 <ivy-module version="1.0">
-    <info organisation="edu.mit.broad" module="picard-private-parts" revision="2068" status="integration" publication="20111024162900" />
+    <info organisation="edu.mit.broad" module="picard-private-parts" revision="2125" status="integration" publication="20111024162900" />
 </ivy-module>
diff --git a/settings/repository/net.sf/picard-1.55.985.xml b/settings/repository/net.sf/picard-1.55.985.xml
deleted file mode 100644
index e74b12604..000000000
--- a/settings/repository/net.sf/picard-1.55.985.xml
+++ /dev/null
@@ -1,3 +0,0 @@
-<ivy-module version="1.0">
-    <info organisation="net.sf" module="picard" revision="1.55.985" status="release" />
-</ivy-module>
diff --git a/settings/repository/net.sf/picard-1.55.985.jar b/settings/repository/net.sf/picard-1.57.1030.jar
similarity index 76%
rename from settings/repository/net.sf/picard-1.55.985.jar
rename to settings/repository/net.sf/picard-1.57.1030.jar
index a8ceaa878..0ce2cb0dc 100644
Binary files a/settings/repository/net.sf/picard-1.55.985.jar and b/settings/repository/net.sf/picard-1.57.1030.jar differ
diff --git a/settings/repository/net.sf/picard-1.57.1030.xml b/settings/repository/net.sf/picard-1.57.1030.xml
new file mode 100644
index 000000000..50e2db846
--- /dev/null
+++ b/settings/repository/net.sf/picard-1.57.1030.xml
@@ -0,0 +1,3 @@
+<ivy-module version="1.0">
+    <info organisation="net.sf" module="picard" revision="1.57.1030" status="release" />
+</ivy-module>
diff --git a/settings/repository/net.sf/sam-1.55.985.xml b/settings/repository/net.sf/sam-1.55.985.xml
deleted file mode 100644
index 415063a62..000000000
--- a/settings/repository/net.sf/sam-1.55.985.xml
+++ /dev/null
@@ -1,3 +0,0 @@
-<ivy-module version="1.0">
-    <info organisation="net.sf" module="sam" revision="1.55.985" status="release" />
-</ivy-module>
diff --git a/settings/repository/net.sf/sam-1.55.985.jar b/settings/repository/net.sf/sam-1.57.1030.jar
similarity index 84%
rename from settings/repository/net.sf/sam-1.55.985.jar
rename to settings/repository/net.sf/sam-1.57.1030.jar
index ff3d9a945..2404c9986 100644
Binary files a/settings/repository/net.sf/sam-1.55.985.jar and b/settings/repository/net.sf/sam-1.57.1030.jar differ
diff --git a/settings/repository/net.sf/sam-1.57.1030.xml b/settings/repository/net.sf/sam-1.57.1030.xml
new file mode 100644
index 000000000..a5dfe0718
--- /dev/null
+++ b/settings/repository/net.sf/sam-1.57.1030.xml
@@ -0,0 +1,3 @@
+<ivy-module version="1.0">
+    <info organisation="net.sf" module="sam" revision="1.57.1030" status="release" />
+</ivy-module>