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VE integration test 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3324 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
rpoplin 2010-05-07 13:58:25 +00:00
parent 7cab994d88
commit 57f254b13a
1 changed files with 3 additions and 3 deletions
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6
java/test/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalIntegrationTest.java
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@ -28,8 +28,8 @@ public class
@Test
public void testVESimple() {
HashMap<String, String> expectations = new HashMap<String, String>();
expectations.put("-L 1:1-10,000,000", "b2fcb4a3e852c43acb93f7720a3c4b76");
expectations.put("-L 1:1-10,000,000 -family NA19238+NA19239=NA19240 -MVQ 0", "63e9b9db244f4a593e643d2d7431219e");
expectations.put("-L 1:1-10,000,000", "08b93c2561742dc480534ae16d2d0508");
expectations.put("-L 1:1-10,000,000 -family NA19238+NA19239=NA19240 -MVQ 0", "65bf329cf1499544d1eb28de786a4561");
for ( Map.Entry<String, String> entry : expectations.entrySet() ) {
String extraArgs = entry.getKey();
@ -71,7 +71,7 @@ public class
String extraArgs = "-L 1:1-10,000,000 -family NA19238+NA19239=NA19240 -MVQ 30";
WalkerTestSpec spec = new WalkerTestSpec( root + " " + extraArgs + " -o %s -outputVCF %s",
2,
Arrays.asList("f7a06a988573c5b1b69e52fb8e0edc06", "b4a42c90318adc88361691ece50426f2"));
Arrays.asList("521837758da151b84fca57fd1bb7dad1", "b4a42c90318adc88361691ece50426f2"));
executeTest("testVEWriteVCF", spec);
}
}