From 5791da17ae8df61e61e299dadfaf3831732d3298 Mon Sep 17 00:00:00 2001
From: sjia <sjia@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Mon, 7 Sep 2009 22:12:56 +0000
Subject: [PATCH] Updated to reference HLA database of unique 4 digit alleles

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1542 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java
index 5a2e927d0..3fc71539f 100644
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java
@@ -35,7 +35,8 @@ public class CallHLAWalker extends LocusWalker<Integer, Pair<Long, Long>>{
 
     //String HLAdatabaseFile = "/Users/shermanjia/Work/HLA.sam";
     //String HLAdatabaseFile ="/humgen/gsa-scr1/GSA/sjia/454_HLA/HLA/HLA.sam";
-    String HLAdatabaseFile ="/humgen/gsa-scr1/GSA/sjia/454_HLA/HLA/HLA.nuc.sam";
+    //String HLAdatabaseFile ="/humgen/gsa-scr1/GSA/sjia/454_HLA/HLA/HLA.nuc.sam";
+    String HLAdatabaseFile ="/humgen/gsa-scr1/GSA/sjia/454_HLA/HLA/HLA.nuc.4digitUnique.sam";