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Updated to reference HLA database of unique 4 digit alleles 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1542 348d0f76-0448-11de-a6fe-93d51630548a
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sjia 2009-09-07 22:12:56 +00:00
parent e716f9337d
commit 5791da17ae
1 changed files with 2 additions and 1 deletions
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3
java/src/org/broadinstitute/sting/playground/gatk/walkers/HLAcaller/CallHLAWalker.java
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@ -35,7 +35,8 @@ public class CallHLAWalker extends LocusWalker<Integer, Pair<Long, Long>>{
//String HLAdatabaseFile = "/Users/shermanjia/Work/HLA.sam";
//String HLAdatabaseFile ="/humgen/gsa-scr1/GSA/sjia/454_HLA/HLA/HLA.sam";
String HLAdatabaseFile ="/humgen/gsa-scr1/GSA/sjia/454_HLA/HLA/HLA.nuc.sam";
//String HLAdatabaseFile ="/humgen/gsa-scr1/GSA/sjia/454_HLA/HLA/HLA.nuc.sam";
String HLAdatabaseFile ="/humgen/gsa-scr1/GSA/sjia/454_HLA/HLA/HLA.nuc.4digitUnique.sam";