Logger output should go to STDERR instead of STDOUT

2014-03-04 19:40:08 -05:00 · 2014-03-04 19:40:08 -05:00 · 57747ad35e
parent b4dde6a78c
commit 57747ad35e
1 changed files with 1 additions and 1 deletions
--- a/public/gatk-framework/src/main/java/org/broadinstitute/sting/commandline/CommandLineUtils.java
+++ b/public/gatk-framework/src/main/java/org/broadinstitute/sting/commandline/CommandLineUtils.java
@ -173,7 +173,7 @@ public class CommandLineUtils {
        }
        // Extracted from BasicConfigurator.configure(), but only applied to the Sting logger.
        Logger.getRootLogger().addAppender(new ConsoleAppender(
-                    new PatternLayout(PatternLayout.TTCC_CONVERSION_PATTERN)));
+                    new PatternLayout(PatternLayout.TTCC_CONVERSION_PATTERN), ConsoleAppender.SYSTEM_ERR));
    }

    /**