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Accidental fail to commit missing file. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4405 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2010-10-01 20:26:51 +00:00
parent fe29c8b09c
commit 575c38fc04
2 changed files with 38 additions and 3 deletions
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38
java/src/org/broadinstitute/sting/gatk/walkers/Attribution.java 100644
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@ -0,0 +1,38 @@
/*
* Copyright (c) 2010, The Broad Institute
*
* Permission is hereby granted, free of charge, to any person
* obtaining a copy of this software and associated documentation
* files (the "Software"), to deal in the Software without
* restriction, including without limitation the rights to use,
* copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following
* conditions:
*
* The above copyright notice and this permission notice shall be
* included in all copies or substantial portions of the Software.
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND
* NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT
* HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY,
* WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
* FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
* OTHER DEALINGS IN THE SOFTWARE.
*/
package org.broadinstitute.sting.gatk.walkers;
import java.lang.annotation.*;
/**
* Allow users to provide attribution text that will appear prominently in the log output.
*/
@Documented
@Inherited
@Retention(RetentionPolicy.RUNTIME)
@Target(ElementType.TYPE)
public @interface Attribution {
public String[] value();
}

3
packages/GenomeAnalysisTK.xml
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@ -23,7 +23,6 @@
<class name="org.broadinstitute.sting.gatk.walkers.coverage.DepthOfCoverageWalker" />
<class name="org.broadinstitute.sting.gatk.walkers.coverage.DoCOutputMultiplexer" />
<class name="org.broadinstitute.sting.gatk.refdata.tracks.builders.RODTrackBuilder" />
<class name="org.broadinstitute.sting.gatk.walkers.PileupWalker" />
<class name="org.broadinstitute.sting.gatk.walkers.PrintReadsWalker" />
<class name="org.broadinstitute.sting.gatk.walkers.qc.CountLociWalker" />
@ -46,8 +45,6 @@
<file name="java/src/org/broadinstitute/sting/gatk/walkers/qc/CountLociWalker.java" />
<file name="java/src/org/broadinstitute/sting/gatk/walkers/qc/CountReadsWalker.java" />
<file name="java/src/org/broadinstitute/sting/gatk/walkers/qc/ValidatingPileupWalker.java" />
<file name="java/src/org/broadinstitute/sting/gatk/examples/HelloWalker.java" />
<file name="java/src/org/broadinstitute/sting/gatk/examples/build.xml" />
<!-- Sample reads and reference files -->
<file name="testdata/exampleBAM.bam" />
<file name="testdata/exampleBAM.bam.bai" />