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The covariates don't care about SAMRecord's anymore - Cleaning up the import statements. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2126 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
rpoplin 2009-11-23 20:10:12 +00:00
parent af9fe78f84
commit 5744a1d968
9 changed files with 0 additions and 22 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/Covariate.java
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@ -1,7 +1,5 @@
package org.broadinstitute.sting.gatk.walkers.recalibration; package org.broadinstitute.sting.gatk.walkers.recalibration;
import net.sf.samtools.SAMRecord;
/* /*
* Copyright (c) 2009 The Broad Institute * Copyright (c) 2009 The Broad Institute
* *

3
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/CycleCovariate.java
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@ -1,10 +1,7 @@
package org.broadinstitute.sting.gatk.walkers.recalibration; package org.broadinstitute.sting.gatk.walkers.recalibration;
import org.broadinstitute.sting.utils.StingException;
import org.broadinstitute.sting.utils.Utils; import org.broadinstitute.sting.utils.Utils;
import net.sf.samtools.SAMRecord;
/* /*
* Copyright (c) 2009 The Broad Institute * Copyright (c) 2009 The Broad Institute
* *

2
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/DinucCovariate.java
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@ -1,7 +1,5 @@
package org.broadinstitute.sting.gatk.walkers.recalibration; package org.broadinstitute.sting.gatk.walkers.recalibration;
import net.sf.samtools.SAMRecord;
import java.util.HashMap; import java.util.HashMap;
import org.broadinstitute.sting.utils.BaseUtils; import org.broadinstitute.sting.utils.BaseUtils;

2
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/MappingQualityCovariate.java
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@ -1,7 +1,5 @@
package org.broadinstitute.sting.gatk.walkers.recalibration; package org.broadinstitute.sting.gatk.walkers.recalibration;
import net.sf.samtools.SAMRecord;
/* /*
* Copyright (c) 2009 The Broad Institute * Copyright (c) 2009 The Broad Institute
* *

2
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/MinimumNQSCovariate.java
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@ -1,7 +1,5 @@
package org.broadinstitute.sting.gatk.walkers.recalibration; package org.broadinstitute.sting.gatk.walkers.recalibration;
import net.sf.samtools.SAMRecord;
/* /*
* Copyright (c) 2009 The Broad Institute * Copyright (c) 2009 The Broad Institute
* *

3
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/PositionCovariate.java
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@ -1,8 +1,5 @@
package org.broadinstitute.sting.gatk.walkers.recalibration; package org.broadinstitute.sting.gatk.walkers.recalibration;
import net.sf.samtools.SAMRecord;
import org.broadinstitute.sting.utils.Utils;
/* /*
* Copyright (c) 2009 The Broad Institute * Copyright (c) 2009 The Broad Institute
* *

4
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/PrimerRoundCovariate.java
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@ -1,9 +1,5 @@
package org.broadinstitute.sting.gatk.walkers.recalibration; package org.broadinstitute.sting.gatk.walkers.recalibration;
import org.broadinstitute.sting.utils.StingException;
import net.sf.samtools.SAMRecord;
/* /*
* Copyright (c) 2009 The Broad Institute * Copyright (c) 2009 The Broad Institute
* *

2
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/QualityScoreCovariate.java
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@ -1,7 +1,5 @@
package org.broadinstitute.sting.gatk.walkers.recalibration; package org.broadinstitute.sting.gatk.walkers.recalibration;
import net.sf.samtools.SAMRecord;
/* /*
* Copyright (c) 2009 The Broad Institute * Copyright (c) 2009 The Broad Institute
* *

2
java/src/org/broadinstitute/sting/gatk/walkers/recalibration/ReadGroupCovariate.java
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@ -1,7 +1,5 @@
package org.broadinstitute.sting.gatk.walkers.recalibration; package org.broadinstitute.sting.gatk.walkers.recalibration;
import net.sf.samtools.SAMRecord;
/* /*
* Copyright (c) 2009 The Broad Institute * Copyright (c) 2009 The Broad Institute
* *