The covariates don't care about SAMRecord's anymore - Cleaning up the import statements.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2126 348d0f76-0448-11de-a6fe-93d51630548a

java/src/org/broadinstitute/sting/gatk/walkers/recalibration/Covariate.java

@@ -1,7 +1,5 @@
 package org.broadinstitute.sting.gatk.walkers.recalibration;
 
-import net.sf.samtools.SAMRecord;
-
 /*
  * Copyright (c) 2009 The Broad Institute
  *

java/src/org/broadinstitute/sting/gatk/walkers/recalibration/CycleCovariate.java

@@ -1,10 +1,7 @@
 package org.broadinstitute.sting.gatk.walkers.recalibration;
 
-import org.broadinstitute.sting.utils.StingException;
 import org.broadinstitute.sting.utils.Utils;
 
-import net.sf.samtools.SAMRecord;
-
 /*
  * Copyright (c) 2009 The Broad Institute
  *

java/src/org/broadinstitute/sting/gatk/walkers/recalibration/DinucCovariate.java

@@ -1,7 +1,5 @@
 package org.broadinstitute.sting.gatk.walkers.recalibration;
 
-import net.sf.samtools.SAMRecord;
-
 import java.util.HashMap;
 
 import org.broadinstitute.sting.utils.BaseUtils;

java/src/org/broadinstitute/sting/gatk/walkers/recalibration/MappingQualityCovariate.java

@@ -1,7 +1,5 @@
 package org.broadinstitute.sting.gatk.walkers.recalibration;
 
-import net.sf.samtools.SAMRecord;
-
 /*
  * Copyright (c) 2009 The Broad Institute
  *

java/src/org/broadinstitute/sting/gatk/walkers/recalibration/MinimumNQSCovariate.java

@@ -1,7 +1,5 @@
 package org.broadinstitute.sting.gatk.walkers.recalibration;
 
-import net.sf.samtools.SAMRecord;
-
 /*
  * Copyright (c) 2009 The Broad Institute
  *

java/src/org/broadinstitute/sting/gatk/walkers/recalibration/PositionCovariate.java

@@ -1,8 +1,5 @@
 package org.broadinstitute.sting.gatk.walkers.recalibration;
 
-import net.sf.samtools.SAMRecord;
-import org.broadinstitute.sting.utils.Utils;
-
 /*
  * Copyright (c) 2009 The Broad Institute
  *

java/src/org/broadinstitute/sting/gatk/walkers/recalibration/PrimerRoundCovariate.java

@@ -1,9 +1,5 @@
 package org.broadinstitute.sting.gatk.walkers.recalibration;
 
-import org.broadinstitute.sting.utils.StingException;
-
-import net.sf.samtools.SAMRecord;
-
 /*
  * Copyright (c) 2009 The Broad Institute
  *

java/src/org/broadinstitute/sting/gatk/walkers/recalibration/QualityScoreCovariate.java

@@ -1,7 +1,5 @@
 package org.broadinstitute.sting.gatk.walkers.recalibration;
 
-import net.sf.samtools.SAMRecord;
-
 /*
  * Copyright (c) 2009 The Broad Institute
  *

java/src/org/broadinstitute/sting/gatk/walkers/recalibration/ReadGroupCovariate.java

@@ -1,7 +1,5 @@
 package org.broadinstitute.sting.gatk.walkers.recalibration;
 
-import net.sf.samtools.SAMRecord;
-
 /*
  * Copyright (c) 2009 The Broad Institute
  *