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All headers are now converted to VCF4 by default. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3741 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2010-07-08 14:14:17 +00:00
parent 6e6ad36523
commit 56a0c7ee6f
1 changed files with 1 additions and 0 deletions
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1
java/src/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariants.java
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@ -138,6 +138,7 @@ public class CombineVariants extends RodWalker<Integer, Integer> {
logger.warn(String.format("Ignoring header line already in map: this header line = " + line + " already present header = " + other)); logger.warn(String.format("Ignoring header line already in map: this header line = " + line + " already present header = " + other));
} }
} else { } else {
line.setVersion(VCFHeaderVersion.VCF4_0);
map.put(key, line); map.put(key, line);
//System.out.printf("Adding header line %s%n", line); //System.out.printf("Adding header line %s%n", line);
} }