Mark pointed out there's differentiation in the filter field. Rolling back.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3687 348d0f76-0448-11de-a6fe-93d51630548a
2010-06-30 17:05:53 +00:00 · 2010-06-30 17:05:53 +00:00 · 569456850d
parent 52a474b27d
commit 569456850d
1 changed files with 0 additions and 2 deletions
--- a/java/src/org/broadinstitute/sting/gatk/walkers/vcf/VCFCombine.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/vcf/VCFCombine.java
@ -204,8 +204,6 @@ public class VCFCombine extends RodWalker<VCFRecord, VCFWriter> {
                        set = priority2 + "-filteredInOther";
                        call = vcf2;
                    }
-                } else {
-                    set = priority1 + "-filteredAndNoCall";
                }
            } else { // good call
                if ( vcf2 != null ) {