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RMDTrackBuilderUnitTest now uses private/testdata file to avoid filesystem race conditions

This commit is contained in:
Mark DePristo 2012-07-25 22:05:04 -04:00
parent 7eb3f54750
commit 5671992db3
1 changed files with 3 additions and 2 deletions
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5
public/java/test/org/broadinstitute/sting/gatk/refdata/tracks/RMDTrackBuilderUnitTest.java
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@ -131,7 +131,7 @@ public class RMDTrackBuilderUnitTest extends BaseTest {
@Test @Test
public void testGenerateIndexForUnindexedFile() { public void testGenerateIndexForUnindexedFile() {
File vcfFile = new File(validationDataLocation + "/ROD_validation/always_reindex.vcf"); File vcfFile = new File(privateTestDir + "always_reindex.vcf");
File vcfFileIndex = Tribble.indexFile(vcfFile); File vcfFileIndex = Tribble.indexFile(vcfFile);
// if we can't write to the directory, don't fault the tester, just pass // if we can't write to the directory, don't fault the tester, just pass
@ -141,7 +141,8 @@ public class RMDTrackBuilderUnitTest extends BaseTest {
} }
// clean-up our test, and previous tests that may have written the file // clean-up our test, and previous tests that may have written the file
vcfFileIndex.deleteOnExit(); vcfFileIndex.deleteOnExit();
if (vcfFileIndex.exists()) vcfFileIndex.delete(); if (vcfFileIndex.exists())
vcfFileIndex.delete();
try { try {
builder.loadIndex(vcfFile, new VCFCodec()); builder.loadIndex(vcfFile, new VCFCodec());