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Merge pull request #154 from broadinstitute/mc_printreads_presorted 

Fix PrintReads out of space issue
This commit is contained in:
Mark DePristo 2013-04-09 11:58:57 -07:00
parent b8bd10469d 3960733c88
commit 55c9542bfd
1 changed files with 1 additions and 1 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/readutils/PrintReads.java
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@ -190,7 +190,7 @@ public class PrintReads extends ReadWalker<GATKSAMRecord, SAMFileWriter> impleme
final boolean preSorted = true; final boolean preSorted = true;
if (getToolkit() != null && getToolkit().getArguments().BQSR_RECAL_FILE != null && !NO_PG_TAG ) { if (getToolkit() != null && getToolkit().getArguments().BQSR_RECAL_FILE != null && !NO_PG_TAG ) {
Utils.setupWriter(out, toolkit, toolkit.getSAMFileHeader(), !preSorted, this, PROGRAM_RECORD_NAME); Utils.setupWriter(out, toolkit, toolkit.getSAMFileHeader(), preSorted, this, PROGRAM_RECORD_NAME);
} }
} }