From 5466365575dbaa34a899a07bb196e6e96c9654bf Mon Sep 17 00:00:00 2001 From: corin Date: Mon, 15 Nov 2010 18:16:51 +0000 Subject: [PATCH] Fixing a silly typo git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4680 348d0f76-0448-11de-a6fe-93d51630548a --- scala/qscript/fullCallingPipeline.q | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/scala/qscript/fullCallingPipeline.q b/scala/qscript/fullCallingPipeline.q index a24ca56b1..54e8973c0 100755 --- a/scala/qscript/fullCallingPipeline.q +++ b/scala/qscript/fullCallingPipeline.q @@ -213,7 +213,7 @@ class fullCallingPipeline extends QScript { snps.min_base_quality_score = Some(20) snps.downsample_to_coverage = Some(qscript.downsampling_coverage) //snps.annotation :+= "QualByDepthV2" - snps.dbsnp =qscript.pipeline.getProject.getDbsnpFile + snps.DBSNP = qscript.pipeline.getProject.getDbsnpFile //if (qscript.trigger != null) { // snps.trigger_min_confidence_threshold_for_calling = Some(30) @@ -323,7 +323,7 @@ class fullCallingPipeline extends QScript { clusters.DBSNP = qscript.pipeline.getProject.getDbsnpFile val clusters_clusterFile = swapExt("SnpCalls/IntermediateFiles",snps.out,".vcf",".cluster") clusters.clusterFile = clusters_clusterFile - clusters.memoryLimit = Some(6) + clusters.memoryLimit = Some(4) clusters.jobQueue = qscript.big_mem_queue clusters.use_annotation ++= List("QD", "SB", "HaplotypeScore", "HRun")