diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java index 1886dc97e..b3bd0253c 100755 --- a/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java +++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java @@ -326,16 +326,6 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest { // // -------------------------------------------------------------------------------------------------------------- - @Test - public void testWithIndelAllelesPassedIn5() { - final String vcf = "small.indel.test.vcf"; - WalkerTest.WalkerTestSpec spec4 = new WalkerTest.WalkerTestSpec( - baseCommandIndelsb37 + " --genotyping_mode GENOTYPE_GIVEN_ALLELES -out_mode EMIT_ALL_SITES -alleles " + validationDataLocation + vcf + " -I " + validationDataLocation + - "NA12878.HiSeq.WGS.bwa.cleaned.recal.hg19.20.bam -o %s -L " + validationDataLocation + vcf, 1, - Arrays.asList("7d069596597aee5e0d562964036141eb")); - executeTest("test GENOTYPE_GIVEN_ALLELES with no evidence in reads", spec4); - } - @Test public void testSnpEffAnnotationRequestedWithoutRodBinding() { WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(