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Resolving conflicts

This commit is contained in:
Eric Banks 2012-03-16 14:36:07 -04:00
parent be9e48ba29
commit 539d51f324
1 changed files with 0 additions and 10 deletions
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10
public/java/test/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperIntegrationTest.java
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@ -326,16 +326,6 @@ public class UnifiedGenotyperIntegrationTest extends WalkerTest {
//
// --------------------------------------------------------------------------------------------------------------
@Test
public void testWithIndelAllelesPassedIn5() {
final String vcf = "small.indel.test.vcf";
WalkerTest.WalkerTestSpec spec4 = new WalkerTest.WalkerTestSpec(
baseCommandIndelsb37 + " --genotyping_mode GENOTYPE_GIVEN_ALLELES -out_mode EMIT_ALL_SITES -alleles " + validationDataLocation + vcf + " -I " + validationDataLocation +
"NA12878.HiSeq.WGS.bwa.cleaned.recal.hg19.20.bam -o %s -L " + validationDataLocation + vcf, 1,
Arrays.asList("7d069596597aee5e0d562964036141eb"));
executeTest("test GENOTYPE_GIVEN_ALLELES with no evidence in reads", spec4);
}
@Test
public void testSnpEffAnnotationRequestedWithoutRodBinding() {
WalkerTest.WalkerTestSpec spec = new WalkerTest.WalkerTestSpec(