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Hmm, not good. Fixing the math in PBT resulted in changed MD5s for integration tests that look like significant changes. I am reverting and will report this to Laurent.

This commit is contained in:
Eric Banks 2012-08-16 21:41:18 -04:00
parent 65c594afff
commit 53383e82ec
1 changed files with 1 additions and 1 deletions
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2
public/java/src/org/broadinstitute/sting/gatk/walkers/phasing/PhaseByTransmission.java
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@ -645,7 +645,7 @@ public class PhaseByTransmission extends RodWalker<HashMap<Byte,Integer>, HashMa
bestChildGenotype.clear(); bestChildGenotype.clear();
bestChildGenotype.add(childGenotype.getKey()); bestChildGenotype.add(childGenotype.getKey());
} }
else if(MathUtils.compareDoubles(configurationLikelihood, bestConfigurationLikelihood) == 0) { else if(configurationLikelihood == bestConfigurationLikelihood) {
bestFirstParentGenotype.add(firstParentGenotype.getKey()); bestFirstParentGenotype.add(firstParentGenotype.getKey());
bestSecondParentGenotype.add(secondParentGenotype.getKey()); bestSecondParentGenotype.add(secondParentGenotype.getKey());
bestChildGenotype.add(childGenotype.getKey()); bestChildGenotype.add(childGenotype.getKey());