diff --git a/CHEATSHEET b/CHEATSHEET deleted file mode 100644 index f61bfdd7f..000000000 --- a/CHEATSHEET +++ /dev/null @@ -1,2 +0,0 @@ -/opt/intel/bin/icc pairhmm-template-main.cc -o pairhmm-template-main.o -O3 -W -Wall -lm -xAVX; ./pairhmm-template-main.o < mediumTest.in > med.out; head -n -5 med.out > medium.out; lua checkLikelihoods.lua medium.out ~/hmm/mediumTest.out 6e-5 - diff --git a/README b/README deleted file mode 100644 index e16df5a8d..000000000 --- a/README +++ /dev/null @@ -1,41 +0,0 @@ -How to compile: -/opt/intel/bin/icc pairhmm-template-main.cc -o pairhmm-template-main.o -O3 -W -Wall -lm -xAVX - ------------------------------------- -How to run: -./pairhmm-template-main.o < ./test_data/largeTest.in > large.out -./pairhmm-template-main.o < ./test_data/mediumTest.in > medium.out -------------------------------------- -Results: -------------------------------------- -MEDIUM FLOAT: -AVX Read Time: 8019020 -AVX Compute Time: 29270238 -AVX Write Time: 242170 -AVX Total Time: 37531428 -# Double called: 0 -------------------------------------- -MEDIUM HYBRID: -AVX Read Time: 7596629 -AVX Compute Time: 29979220 -AVX Write Time: 248485 -AVX Total Time: 37824334 -# Double called: 20329 -------------------------------------- -LARGE FLOAT: -AVX Read Time: 111888586 -AVX Compute Time: 408131806 -AVX Write Time: 3477892 -AVX Total Time: 523498284 -# Double called: 0 -------------------------------------- -LARGE HYBRID: -AVX Read Time: 109728994 -AVX Compute Time: 419475317 -AVX Write Time: 3575364 -AVX Total Time: 532779675 -# Double called: 310042 - - - -