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Oooops, forgot to update the test 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3229 348d0f76-0448-11de-a6fe-93d51630548a
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asivache 2010-04-21 18:38:24 +00:00
parent 1373fee278
commit 532263ea25
1 changed files with 2 additions and 2 deletions
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4
java/test/org/broadinstitute/sting/gatk/refdata/VariantContextAdaptorsUnitTest.java
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@ -78,7 +78,7 @@ public class VariantContextAdaptorsUnitTest extends BaseTest {
glf.next(); glf.next();
records.add((GLFSingleCall)glf.mRecord); // we know they're all single calls in the reference file records.add((GLFSingleCall)glf.mRecord); // we know they're all single calls in the reference file
VariantContext vc = VariantContextAdaptors.toVariantContext("GLF",glf); VariantContext vc = VariantContextAdaptors.toVariantContext("GLF",glf);
gw.addCall(vc); gw.addCall(vc,null);
} }
gw.close(); // close the file gw.close(); // close the file
@ -142,7 +142,7 @@ public class VariantContextAdaptorsUnitTest extends BaseTest {
parseGeli(geliText, line); parseGeli(geliText, line);
records.add(geliText); // we know they're all single calls in the reference file records.add(geliText); // we know they're all single calls in the reference file
VariantContext vc = VariantContextAdaptors.toVariantContext("Geli",geliText); VariantContext vc = VariantContextAdaptors.toVariantContext("Geli",geliText);
gw.addCall(vc); gw.addCall(vc,null);
line = readLine(reader); line = readLine(reader);
} }
gw.close(); // close the file gw.close(); // close the file