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Bug fix. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5985 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2011-06-13 18:48:55 +00:00
parent 1d1c9da783
commit 52f930d708
1 changed files with 1 additions and 1 deletions
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2
python/generate_per_sample_metrics.py
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@ -65,7 +65,7 @@ for sample_id,filename in samples.items():
insert_size_metrics = get_metrics('%s.%s' % (basepath,'insert_size_metrics'))[0]
dbsnp_matches = get_metrics('%s.%s' % (basepath,'dbsnp_matches'))[0]
print string.join(data,'\t')%(sample_id,str(min(haplotypes_confidently_matching)),str(max(haplotypes_confidently_matching)),str(median(haplotypes_confidently_matching)),
print string.join(data,'\t')%(sample_id,min_haplotypes_confidently_matching,max_haplotypes_confidently_matching,median_haplotypes_confidently_matching,
hybrid_selection_metrics.BAIT_SET,hybrid_selection_metrics.GENOME_SIZE,hybrid_selection_metrics.PCT_SELECTED_BASES,
hybrid_selection_metrics.MEAN_TARGET_COVERAGE,hybrid_selection_metrics.ZERO_CVG_TARGETS_PCT,hybrid_selection_metrics.FOLD_80_BASE_PENALTY,
hybrid_selection_metrics.HS_LIBRARY_SIZE,alignment_summary_metrics.PCT_PF_READS_ALIGNED,alignment_summary_metrics.PF_HQ_ERROR_RATE,