diff --git a/.gitignore b/.gitignore
index 8623fa076..456794cea 100644
--- a/.gitignore
+++ b/.gitignore
@@ -18,3 +18,10 @@ queueScatterGather
 /bar*
 integrationtests/
 public/testdata/onTheFlyOutputTest.vcf
+private/testdata/onTheFlyOutputTest.vcf
+lib
+html
+gatkdocs
+dist
+build
+resources