From 52a570637dd5be5433e80f2755593bd6316c5dac Mon Sep 17 00:00:00 2001
From: asivache <asivache@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 20 Apr 2010 19:16:39 +0000
Subject: [PATCH] Always keep event bases in upper case

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3217 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/utils/pileup/ExtendedEventPileupElement.java          | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/utils/pileup/ExtendedEventPileupElement.java b/java/src/org/broadinstitute/sting/utils/pileup/ExtendedEventPileupElement.java
index 1e519d1e7..21b7aad11 100644
--- a/java/src/org/broadinstitute/sting/utils/pileup/ExtendedEventPileupElement.java
+++ b/java/src/org/broadinstitute/sting/utils/pileup/ExtendedEventPileupElement.java
@@ -57,7 +57,7 @@ public class ExtendedEventPileupElement extends PileupElement {
         if ( length <= 0 ) type = Type.NOEVENT;
         else {
             if ( eventBases != null ) {
-                this.eventBases = new String(eventBases);
+                this.eventBases = new String(eventBases).toUpperCase();
                 type = Type.INSERTION;
             } else {
                 type = Type.DELETION;