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Added phasing sub-directory to keep walkers directory clean 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4208 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
fromer 2010-09-03 13:38:46 +00:00
parent c0ce9ca8cc
commit 529eecd4dc
2 changed files with 4 additions and 3 deletions
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4
java/src/org/broadinstitute/sting/gatk/walkers/varianteval/GenotypePhasingEvaluator.java
View File

@ -4,7 +4,7 @@ import org.broad.tribble.util.variantcontext.Genotype;
import org.broad.tribble.util.variantcontext.VariantContext;
import org.broadinstitute.sting.gatk.contexts.*;
import org.broadinstitute.sting.gatk.refdata.*;
import org.broadinstitute.sting.playground.gatk.walkers.Biallele;
import org.broadinstitute.sting.playground.gatk.walkers.phasing.*;
import org.broadinstitute.sting.playground.utils.report.tags.Analysis;
import org.broadinstitute.sting.playground.utils.report.tags.DataPoint;
import org.broadinstitute.sting.playground.utils.report.utils.TableType;
@ -422,4 +422,4 @@ class SamplePhasingStatistics implements TableType {
}
return sb.toString();
}
}
}

3
java/src/org/broadinstitute/sting/playground/gatk/walkers/ReadBackedPhasingWalker.java
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@ -41,6 +41,7 @@ import org.broadinstitute.sting.utils.*;
import org.broadinstitute.sting.utils.vcf.VCFUtils;
import org.broadinstitute.sting.utils.pileup.PileupElement;
import org.broadinstitute.sting.utils.pileup.ReadBackedPileup;
import org.broadinstitute.sting.playground.gatk.walkers.phasing.*;
import java.io.*;
import java.util.*;
@ -1212,4 +1213,4 @@ class PhasingQualityStatsWriter {
}
}
}
}
}