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Making the outputDir optional. Default = ./

This commit is contained in:
Mauricio Carneiro 2011-07-05 16:30:41 -04:00
parent 7d3dfdfdf2
commit 5298e3a942
1 changed files with 1 additions and 1 deletions
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2
public/scala/qscript/org/broadinstitute/sting/queue/qscripts/MethodsDevelopmentCallingPipeline.scala
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@ -19,7 +19,7 @@ import org.broadinstitute.sting.gatk.phonehome.GATKRunReport
class MethodsDevelopmentCallingPipeline extends QScript {
qscript =>
@Argument(shortName="outputDir", doc="output directory", required=true)
@Argument(shortName="outputDir", doc="output directory", required=false)
var outputDir: String = "./"
@Argument(shortName="skipCalling", doc="skip the calling part of the pipeline and only run VQSR on preset, gold standard VCF files", required=false)