diff --git a/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariantsIntegrationTest.java b/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariantsIntegrationTest.java
index 9577966b7..900e3d489 100755
--- a/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariantsIntegrationTest.java
+++ b/public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/SelectVariantsIntegrationTest.java
@@ -45,7 +45,7 @@ public class SelectVariantsIntegrationTest extends WalkerTest {
         WalkerTestSpec spec = new WalkerTestSpec(
                 baseTestString(" -sn A -sn B -sn C --variant " + testfile),
                 1,
-                Arrays.asList("b74038779fe6485dbb8734ae48178356")
+                Arrays.asList("5085a2f8cddfeae9f6274f905025184f")
         );
 
         executeTest("testRepeatedLineSelection--" + testfile, spec);
@@ -129,6 +129,19 @@ public class SelectVariantsIntegrationTest extends WalkerTest {
         executeTest("testMultipleRecordsAtOnePositionFirstIsFiltered--" + testFile, spec);
     }
 
+    @Test
+    public void testNoGTs() {
+        String testFile = validationDataLocation + "vcf4.1.example.vcf";
+
+        WalkerTestSpec spec = new WalkerTestSpec(
+                "-T SelectVariants -R " + b37KGReference + " --variant " + testFile + " -o %s -NO_HEADER",
+                1,
+                Arrays.asList("f17885e5cbd5387edb99112047ea43c1")
+        );
+
+        executeTest("testMultipleRecordsAtOnePositionFirstIsFiltered--" + testFile, spec);
+    }
+
     @Test
     public void testParallelization() {
         String testfile = validationDataLocation + "test.filtered.maf_annotated.vcf";