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Add RemoveProgramRecords annotation to ActiveRegionWalker

This commit is contained in:
Joel Thibault 2012-08-02 14:46:00 -04:00
parent addbfd6437
commit 51bd03cc36
1 changed files with 1 additions and 0 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/ActiveRegionWalker.java
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@ -32,6 +32,7 @@ import java.util.List;
@PartitionBy(PartitionType.READ) @PartitionBy(PartitionType.READ)
@ActiveRegionExtension(extension=50,maxRegion=1500) @ActiveRegionExtension(extension=50,maxRegion=1500)
@ReadFilters({UnmappedReadFilter.class, NotPrimaryAlignmentFilter.class, DuplicateReadFilter.class, FailsVendorQualityCheckFilter.class, MappingQualityUnavailableFilter.class}) @ReadFilters({UnmappedReadFilter.class, NotPrimaryAlignmentFilter.class, DuplicateReadFilter.class, FailsVendorQualityCheckFilter.class, MappingQualityUnavailableFilter.class})
@RemoveProgramRecords
public abstract class ActiveRegionWalker<MapType, ReduceType> extends Walker<MapType, ReduceType> { public abstract class ActiveRegionWalker<MapType, ReduceType> extends Walker<MapType, ReduceType> {
@Output(fullName="activeRegionOut", shortName="ARO", doc="Output the active region to this interval list file", required = false) @Output(fullName="activeRegionOut", shortName="ARO", doc="Output the active region to this interval list file", required = false)