From 51bd03cc36cd709b0a5a070246729858bba5bc54 Mon Sep 17 00:00:00 2001
From: Joel Thibault <thibault@broadinstitute.org>
Date: Thu, 2 Aug 2012 14:46:00 -0400
Subject: [PATCH] Add RemoveProgramRecords annotation to ActiveRegionWalker

---
 .../broadinstitute/sting/gatk/walkers/ActiveRegionWalker.java    | 1 +
 1 file changed, 1 insertion(+)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/ActiveRegionWalker.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/ActiveRegionWalker.java
index b2975cbbf..aba508b3e 100644
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/ActiveRegionWalker.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/ActiveRegionWalker.java
@@ -32,6 +32,7 @@ import java.util.List;
 @PartitionBy(PartitionType.READ)
 @ActiveRegionExtension(extension=50,maxRegion=1500)
 @ReadFilters({UnmappedReadFilter.class, NotPrimaryAlignmentFilter.class, DuplicateReadFilter.class, FailsVendorQualityCheckFilter.class, MappingQualityUnavailableFilter.class})
+@RemoveProgramRecords
 public abstract class ActiveRegionWalker<MapType, ReduceType> extends Walker<MapType, ReduceType> {
 
     @Output(fullName="activeRegionOut", shortName="ARO", doc="Output the active region to this interval list file", required = false)