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Karthik Gururaj 2014-03-05 11:19:08 -08:00
parent cf87bdfbb7 2648b41398
commit 51b8ea5d59
1 changed files with 1 additions and 0 deletions
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protected/gatk-protected/src/main/java/org/broadinstitute/sting/gatk/walkers/haplotypecaller/PairHMMLikelihoodCalculationEngine.java
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@ -180,6 +180,7 @@ public class PairHMMLikelihoodCalculationEngine implements LikelihoodCalculation
pairHMMThreadLocal.get().close(); pairHMMThreadLocal.get().close();
} }
private void writeDebugLikelihoods(final GATKSAMRecord processedRead, final Haplotype haplotype, final double log10l){ private void writeDebugLikelihoods(final GATKSAMRecord processedRead, final Haplotype haplotype, final double log10l){
if ( WRITE_LIKELIHOODS_TO_FILE ) { if ( WRITE_LIKELIHOODS_TO_FILE ) {
likelihoodsStream.printf("%s %s %s %s %s %s %f%n", likelihoodsStream.printf("%s %s %s %s %s %s %f%n",