From 51b399808263ff99c215316f1908ee271ef031dc Mon Sep 17 00:00:00 2001 From: depristo Date: Wed, 21 Apr 2010 13:22:19 +0000 Subject: [PATCH] deleting unused code from VariationFiltration git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3224 348d0f76-0448-11de-a6fe-93d51630548a --- .../walkers/filters/VariantFiltrationWalker.java | 14 +------------- 1 file changed, 1 insertion(+), 13 deletions(-) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java index 0abf8ac96..cf6a3e182 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java @@ -72,24 +72,12 @@ public class VariantFiltrationWalker extends RodWalker { List filterExps; List genotypeFilterExps; - public static final String CLUSTERED_SNP_FILTER_NAME = "SnpCluster"; private VCFWriter writer = null; + public static final String CLUSTERED_SNP_FILTER_NAME = "SnpCluster"; private ClusteredSnps clusteredSNPs = null; - class FilterExp { - String name; - String expStr; - Expression exp; - - public FilterExp(String name, String str, Expression exp) { - this.name = name; - this.expStr = str; - this.exp = exp; - } - } - // the structures necessary to initialize and maintain a windowed context private FiltrationContextWindow variantContextWindow; private static final int windowSize = 10; // 10 variants on either end of the current one