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deleting unused code from VariationFiltration 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3224 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2010-04-21 13:22:19 +00:00
parent 4abd3b0b7b
commit 51b3998082
1 changed files with 1 additions and 13 deletions
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14
java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java
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@ -72,24 +72,12 @@ public class VariantFiltrationWalker extends RodWalker<Integer, Integer> {
List<VariantContextUtils.JexlVCMatchExp> filterExps;
List<VariantContextUtils.JexlVCMatchExp> genotypeFilterExps;
public static final String CLUSTERED_SNP_FILTER_NAME = "SnpCluster";
private VCFWriter writer = null;
public static final String CLUSTERED_SNP_FILTER_NAME = "SnpCluster";
private ClusteredSnps clusteredSNPs = null;
class FilterExp {
String name;
String expStr;
Expression exp;
public FilterExp(String name, String str, Expression exp) {
this.name = name;
this.expStr = str;
this.exp = exp;
}
}
// the structures necessary to initialize and maintain a windowed context
private FiltrationContextWindow variantContextWindow;
private static final int windowSize = 10; // 10 variants on either end of the current one