From 514b28210e363034dcf96fef42a03ea94af3c802 Mon Sep 17 00:00:00 2001 From: ebanks Date: Wed, 15 Sep 2010 01:48:33 +0000 Subject: [PATCH] Have VF write to sdout when no -o is supplied git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4282 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/walkers/filters/VariantFiltrationWalker.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java index ccc5ace3c..c17b94d3b 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/filters/VariantFiltrationWalker.java @@ -50,7 +50,7 @@ import java.util.*; @Reference(window=@Window(start=-50,stop=50)) public class VariantFiltrationWalker extends RodWalker { - @Output(doc="File to which variants should be written",required=false) + @Output(doc="File to which variants should be written", required=true) protected VCFWriter writer = null; @Argument(fullName="filterExpression", shortName="filter", doc="One or more expression used with INFO fields to filter (see wiki docs for more info)", required=false)