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Minor bug fixee, replace double quotes with single quotes in strings so that R can read the resulting table 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4910 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2010-12-29 16:25:59 +00:00
parent a31f6e4e99
commit 501d44fa04
1 changed files with 10 additions and 4 deletions
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14
python/analyzeRunReports.py
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@ -193,15 +193,21 @@ class RecordAsTable(StageHandler):
val = parsed[field] val = parsed[field]
if val == None: if val == None:
if OPTIONS.verbose: print >> sys.stderr, 'field', field, 'is missing in', parsed['id'] if OPTIONS.verbose: print >> sys.stderr, 'field', field, 'is missing in', parsed['id']
elif val.find(" ") != -1: else:
val = "\"" + val + "\"" val = val.replace('"',"'")
# if val.find("\t") != -1:
# if OPTIONS.verbose: print >> sys.stderr, 'Warning -- val', val, 'contains tabs, droping field', field
# raise Error
#val = "value contained tabs, dropped"
if val.find(" ") != -1:
val = "\"" + val + "\""
return val return val
try: try:
print >> self.out, "\t".join([ oneField(field) for field in self.decoder.fields ]) print >> self.out, "\t".join([ oneField(field) for field in self.decoder.fields ])
except: except:
print 'Failed to convert to table ', parsed
pass pass
#print 'Failed to convert to table ', parsed
addHandler('table', RecordAsTable) addHandler('table', RecordAsTable)
class CountRecords(StageHandler): class CountRecords(StageHandler):