zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Move some classes back to public because they are used in the engine. Move some test classes to protected. We should have no more public->protected dependancies now

This commit is contained in:
Eric Banks 2013-01-09 11:06:10 -05:00
parent 676e79542a
commit 4fa439d89e
22 changed files with 0 additions and 0 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

0
public/java/test/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/DiagnoseTargetsIntegrationTest.java → protected/java/test/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/DiagnoseTargetsIntegrationTest.java
View File

0
public/java/test/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/LocusStatisticsUnitTest.java → protected/java/test/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/LocusStatisticsUnitTest.java
View File

0
public/java/test/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/SampleStatisticsUnitTest.java → protected/java/test/org/broadinstitute/sting/gatk/walkers/diagnostics/targets/SampleStatisticsUnitTest.java
View File

0
public/java/test/org/broadinstitute/sting/utils/recalibration/ContextCovariateUnitTest.java → protected/java/test/org/broadinstitute/sting/utils/recalibration/ContextCovariateUnitTest.java
View File

0
public/java/test/org/broadinstitute/sting/utils/recalibration/CycleCovariateUnitTest.java → protected/java/test/org/broadinstitute/sting/utils/recalibration/CycleCovariateUnitTest.java
View File

0
public/java/test/org/broadinstitute/sting/utils/recalibration/QualQuantizerUnitTest.java → protected/java/test/org/broadinstitute/sting/utils/recalibration/QualQuantizerUnitTest.java
View File

0
public/java/test/org/broadinstitute/sting/utils/recalibration/ReadCovariatesUnitTest.java → protected/java/test/org/broadinstitute/sting/utils/recalibration/ReadCovariatesUnitTest.java
View File

0
public/java/test/org/broadinstitute/sting/utils/recalibration/ReadGroupCovariateUnitTest.java → protected/java/test/org/broadinstitute/sting/utils/recalibration/ReadGroupCovariateUnitTest.java
View File

0
public/java/test/org/broadinstitute/sting/utils/recalibration/RecalDatumUnitTest.java → protected/java/test/org/broadinstitute/sting/utils/recalibration/RecalDatumUnitTest.java
View File

0
public/java/test/org/broadinstitute/sting/utils/recalibration/RecalUtilsUnitTest.java → protected/java/test/org/broadinstitute/sting/utils/recalibration/RecalUtilsUnitTest.java
View File

0
public/java/test/org/broadinstitute/sting/utils/recalibration/RecalibrationReportUnitTest.java → protected/java/test/org/broadinstitute/sting/utils/recalibration/RecalibrationReportUnitTest.java
View File

0
public/java/test/org/broadinstitute/sting/utils/recalibration/RecalibrationTablesUnitTest.java → protected/java/test/org/broadinstitute/sting/utils/recalibration/RecalibrationTablesUnitTest.java
View File

0
public/java/test/org/broadinstitute/sting/utils/recalibration/RecalibrationTestUtils.java → protected/java/test/org/broadinstitute/sting/utils/recalibration/RecalibrationTestUtils.java
View File

0
protected/java/src/org/broadinstitute/sting/gatk/walkers/coverage/CoverageUtils.java → public/java/src/org/broadinstitute/sting/gatk/walkers/coverage/CoverageUtils.java
View File

0
protected/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DoCOutputType.java → public/java/src/org/broadinstitute/sting/gatk/walkers/coverage/DoCOutputType.java
View File

0
protected/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/DiffElement.java → public/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/DiffElement.java
View File

0
protected/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/DiffEngine.java → public/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/DiffEngine.java
View File

0
protected/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/DiffNode.java → public/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/DiffNode.java
View File

0
protected/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/DiffObjects.java → public/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/DiffObjects.java
View File

0
protected/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/DiffValue.java → public/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/DiffValue.java
View File

0
protected/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/DiffableReader.java → public/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/DiffableReader.java
View File

0
protected/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/Difference.java → public/java/src/org/broadinstitute/sting/gatk/walkers/diffengine/Difference.java
View File