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Updated to reflect new parse() function

This commit is contained in:
Mark DePristo 2011-07-30 15:34:20 -04:00
parent 7b07c4e04e
commit 4f8d830960
1 changed files with 5 additions and 0 deletions
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5
public/scala/src/org/broadinstitute/sting/queue/util/ScalaCompoundArgumentTypeDescriptor.scala
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@ -4,6 +4,7 @@ import collection.JavaConversions._
import org.broadinstitute.sting.queue.QException import org.broadinstitute.sting.queue.QException
import java.lang.Class import java.lang.Class
import org.broadinstitute.sting.commandline.{ArgumentMatches, ArgumentSource, ArgumentTypeDescriptor, ParsingEngine} import org.broadinstitute.sting.commandline.{ArgumentMatches, ArgumentSource, ArgumentTypeDescriptor, ParsingEngine}
import java.lang.reflect.Type
/** /**
* An ArgumentTypeDescriptor that can parse the scala collections. * An ArgumentTypeDescriptor that can parse the scala collections.
@ -42,6 +43,10 @@ class ScalaCompoundArgumentTypeDescriptor extends ArgumentTypeDescriptor {
* @param argumentMatches The argument match strings that were found for this argument source. * @param argumentMatches The argument match strings that were found for this argument source.
* @return The parsed object. * @return The parsed object.
*/ */
def parse(parsingEngine: ParsingEngine, source: ArgumentSource, typeType: Type, argumentMatches: ArgumentMatches) = {
parse(parsingEngine,source, makeRawTypeIfNecessary(typeType), argumentMatches)
}
def parse(parsingEngine: ParsingEngine, source: ArgumentSource, classType: Class[_], argumentMatches: ArgumentMatches) = { def parse(parsingEngine: ParsingEngine, source: ArgumentSource, classType: Class[_], argumentMatches: ArgumentMatches) = {
val componentType = ReflectionUtils.getCollectionType(source.field) val componentType = ReflectionUtils.getCollectionType(source.field)
val componentArgumentParser = parsingEngine.selectBestTypeDescriptor(componentType) val componentArgumentParser = parsingEngine.selectBestTypeDescriptor(componentType)