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toString() implemented 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1472 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2009-08-28 01:03:58 +00:00
parent dc9d40eb9a
commit 4f7ed69242
1 changed files with 5 additions and 1 deletions
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6
java/src/org/broadinstitute/sting/utils/ReadBackedPileup.java
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@ -58,7 +58,7 @@ public class ReadBackedPileup extends BasicPileup {
}
public String getQualsAsInts() {
System.out.printf("getQualsAsInts");
//System.out.printf("getQualsAsInts");
return Utils.join(",", qualPileup(reads, offsets));
}
@ -99,6 +99,10 @@ public class ReadBackedPileup extends BasicPileup {
return probDistPileupAsString(reads, offsets);
}
public String toString() {
return getPileupString(true);
}
public String getPileupString(boolean qualsAsInts)
{
// In the pileup format, each line represents a genomic position, consisting of chromosome name,