From 4f37d6d399866bb90169fb1fbdde32e880964f4c Mon Sep 17 00:00:00 2001
From: Eric Banks <ebanks@broadinstitute.org>
Date: Thu, 10 May 2012 00:56:00 -0400
Subject: [PATCH] Fixing docs

---
 .../sting/gatk/walkers/annotator/QualByDepth.java             | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java
index 51b834bd2..b892b9647 100755
--- a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java
@@ -21,7 +21,7 @@ import java.util.List;
 import java.util.Map;
 
 /**
- * Variant confidence (given as (AB+BB)/AA from the PLs) / unfiltered depth.
+ * Variant confidence (from the QUAL field) / unfiltered depth.
  *
  * Low scores are indicative of false positive calls and artifacts.  Note that QualByDepth requires sequencing
  * reads associated with the samples with polymorphic genotypes.
@@ -101,4 +101,4 @@ public class QualByDepth extends InfoFieldAnnotation implements StandardAnnotati
         return map;
     }
 
-}
\ No newline at end of file
+}