diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java index 51b834bd2..b892b9647 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/annotator/QualByDepth.java @@ -21,7 +21,7 @@ import java.util.List; import java.util.Map; /** - * Variant confidence (given as (AB+BB)/AA from the PLs) / unfiltered depth. + * Variant confidence (from the QUAL field) / unfiltered depth. * * Low scores are indicative of false positive calls and artifacts. Note that QualByDepth requires sequencing * reads associated with the samples with polymorphic genotypes. @@ -101,4 +101,4 @@ public class QualByDepth extends InfoFieldAnnotation implements StandardAnnotati return map; } -} \ No newline at end of file +}