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Added toString() method 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3516 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
weisburd 2010-06-09 17:12:57 +00:00
parent 6fd2d39a7d
commit 4f1181974b
1 changed files with 7 additions and 3 deletions
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10
java/src/org/broadinstitute/sting/playground/gatk/walkers/annotator/AminoAcid.java
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@ -30,7 +30,7 @@ package org.broadinstitute.sting.playground.gatk.walkers.annotator;
*/ */
public class AminoAcid { public class AminoAcid {
private String name; private String name;
private String code; private String threeLetterCode;
private String letter; private String letter;
@ -43,7 +43,7 @@ public class AminoAcid {
*/ */
public AminoAcid( String letter, String name, String code) { public AminoAcid( String letter, String name, String code) {
this.name = name; this.name = name;
this.code = code; this.threeLetterCode = code;
this.letter = letter; this.letter = letter;
} }
@ -74,11 +74,15 @@ public class AminoAcid {
/** /**
* Returns the 3 letter code. * Returns the 3 letter code.
*/ */
public String getCode() { return code; } public String getCode() { return threeLetterCode; }
/** Returns true if the amino acid is really just a stop codon. */ /** Returns true if the amino acid is really just a stop codon. */
public boolean isStop() { public boolean isStop() {
return "*".equals(getLetter()); return "*".equals(getLetter());
} }
public String toString() {
return name;
}
} }