diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/annotator/AminoAcid.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/annotator/AminoAcid.java index 76ff3f438..b0f060bc4 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/annotator/AminoAcid.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/annotator/AminoAcid.java @@ -30,7 +30,7 @@ package org.broadinstitute.sting.playground.gatk.walkers.annotator; */ public class AminoAcid { private String name; - private String code; + private String threeLetterCode; private String letter; @@ -43,7 +43,7 @@ public class AminoAcid { */ public AminoAcid( String letter, String name, String code) { this.name = name; - this.code = code; + this.threeLetterCode = code; this.letter = letter; } @@ -74,11 +74,15 @@ public class AminoAcid { /** * Returns the 3 letter code. */ - public String getCode() { return code; } + public String getCode() { return threeLetterCode; } /** Returns true if the amino acid is really just a stop codon. */ public boolean isStop() { return "*".equals(getLetter()); } + + public String toString() { + return name; + } }