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Merge pull request #1414 from broadinstitute/rhl_sv_hashmap 

Change HashMap to LinkedHashMap for predictable iteration order.
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Ron Levine 2016-06-23 12:22:43 -04:00 committed by GitHub
parent 679941c1b1 c6ef81b611
commit 4eff18a470
1 changed files with 1 additions and 1 deletions
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public/gatk-tools-public/src/main/java/org/broadinstitute/gatk/tools/walkers/variantutils/SelectVariants.java
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@ -627,7 +627,7 @@ public class SelectVariants extends RodWalker<Integer, Integer> implements TreeR
private Map<String, VCFHeader> vcfRods; private Map<String, VCFHeader> vcfRods;
private final List<Allele> diploidNoCallAlleles = GATKVariantContextUtils.noCallAlleles(2); private final List<Allele> diploidNoCallAlleles = GATKVariantContextUtils.noCallAlleles(2);
private final Map<Integer, Integer> ploidyToNumberOfAlleles = new HashMap<Integer, Integer>(); private final Map<Integer, Integer> ploidyToNumberOfAlleles = new LinkedHashMap<Integer, Integer>();
/** /**
* Set up the VCF writer, the sample expressions and regexs, and the JEXL matcher * Set up the VCF writer, the sample expressions and regexs, and the JEXL matcher