diff --git a/java/test/org/broadinstitute/sting/utils/genotype/vcf/VCFReaderUnitTest.java b/java/test/org/broadinstitute/sting/utils/genotype/vcf/VCFReaderUnitTest.java index 1097a120c..c419f49e0 100644 --- a/java/test/org/broadinstitute/sting/utils/genotype/vcf/VCFReaderUnitTest.java +++ b/java/test/org/broadinstitute/sting/utils/genotype/vcf/VCFReaderUnitTest.java @@ -318,19 +318,19 @@ public class VCFReaderUnitTest extends BaseTest { rec = reader.next(); Assert.assertTrue(!rec.isFiltered()); Assert.assertTrue(rec.getFilterString().equals(".")); - // TODO: Aaron fix me Assert.assertEquals(Variation.VARIANT_TYPE.SNP, rec.getType()); + Assert.assertEquals(VCFGenotypeEncoding.TYPE.SINGLE_BASE, rec.getType()); // record #9: deletion if (!reader.hasNext()) Assert.fail("The reader should have a record"); rec = reader.next(); - // TODO: Aaron fix me Assert.assertEquals(Variation.VARIANT_TYPE.DELETION, rec.getType()); + Assert.assertEquals(VCFGenotypeEncoding.TYPE.DELETION, rec.getType()); Assert.assertEquals(1, rec.getAlternateAlleleList().size()); Assert.assertTrue(rec.getAlternateAlleleList().get(0).equals("")); // record #10: insertion if (!reader.hasNext()) Assert.fail("The reader should have a record"); rec = reader.next(); - // TODO: Aaron fix me Assert.assertEquals(Variation.VARIANT_TYPE.INSERTION, rec.getType()); + Assert.assertEquals(VCFGenotypeEncoding.TYPE.INSERTION, rec.getType()); Assert.assertEquals(rec.getAlternateAlleleList().size(), 1); Assert.assertTrue(rec.getAlternateAlleleList().get(0).equals("CAT"));