diff --git a/java/src/org/broadinstitute/sting/utils/sam/ArtificialSAMUtils.java b/java/src/org/broadinstitute/sting/utils/sam/ArtificialSAMUtils.java index 14512a300..d805aa4dd 100755 --- a/java/src/org/broadinstitute/sting/utils/sam/ArtificialSAMUtils.java +++ b/java/src/org/broadinstitute/sting/utils/sam/ArtificialSAMUtils.java @@ -204,7 +204,7 @@ public class ArtificialSAMUtils { * * @return StingSAMIterator representing the specified amount of fake data */ - public static QueryIterator unmappedReadIterator( int startingChr, int endingChr, int readCount ) { + public static QueryIterator mappedReadIterator( int startingChr, int endingChr, int readCount ) { SAMFileHeader header = createArtificialSamHeader(( endingChr - startingChr ) + 1, startingChr, readCount + DEFAULT_READ_LENGTH); return new ArtificialSAMQueryIterator(startingChr, endingChr, readCount, 0, header); @@ -220,7 +220,7 @@ public class ArtificialSAMUtils { * * @return StingSAMIterator representing the specified amount of fake data */ - public static ArtificialSAMIterator unmappedReadIterator( int startingChr, int endingChr, int readCount, int unmappedReadCount ) { + public static ArtificialSAMIterator mappedAndUnmappedReadIterator( int startingChr, int endingChr, int readCount, int unmappedReadCount ) { SAMFileHeader header = createArtificialSamHeader(( endingChr - startingChr ) + 1, startingChr, readCount + DEFAULT_READ_LENGTH); return new ArtificialSAMQueryIterator(startingChr, endingChr, readCount, unmappedReadCount, header);