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forgot a file 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1096 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2009-06-25 17:56:17 +00:00
parent 5b1c23a7f2
commit 4e04370f14
1 changed files with 2 additions and 2 deletions
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4
java/src/org/broadinstitute/sting/utils/sam/ArtificialSAMUtils.java
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@ -204,7 +204,7 @@ public class ArtificialSAMUtils {
*
* @return StingSAMIterator representing the specified amount of fake data
*/
public static QueryIterator unmappedReadIterator( int startingChr, int endingChr, int readCount ) {
public static QueryIterator mappedReadIterator( int startingChr, int endingChr, int readCount ) {
SAMFileHeader header = createArtificialSamHeader(( endingChr - startingChr ) + 1, startingChr, readCount + DEFAULT_READ_LENGTH);
return new ArtificialSAMQueryIterator(startingChr, endingChr, readCount, 0, header);
@ -220,7 +220,7 @@ public class ArtificialSAMUtils {
*
* @return StingSAMIterator representing the specified amount of fake data
*/
public static ArtificialSAMIterator unmappedReadIterator( int startingChr, int endingChr, int readCount, int unmappedReadCount ) {
public static ArtificialSAMIterator mappedAndUnmappedReadIterator( int startingChr, int endingChr, int readCount, int unmappedReadCount ) {
SAMFileHeader header = createArtificialSamHeader(( endingChr - startingChr ) + 1, startingChr, readCount + DEFAULT_READ_LENGTH);
return new ArtificialSAMQueryIterator(startingChr, endingChr, readCount, unmappedReadCount, header);