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removing temporary bam index 

The clean bai file was left behind after the data processing pipeline was done
This commit is contained in:
Mauricio Carneiro 2011-08-08 10:49:28 -04:00
parent aff681e407
commit 4d6cb33612
1 changed files with 1 additions and 0 deletions
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public/scala/qscript/org/broadinstitute/sting/queue/qscripts/DataProcessingPipeline.scala
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@ -313,6 +313,7 @@ class DataProcessingPipeline extends QScript {
} }
case class clean (inBams: File, tIntervals: File, outBam: File) extends IndelRealigner with CommandLineGATKArgs { case class clean (inBams: File, tIntervals: File, outBam: File) extends IndelRealigner with CommandLineGATKArgs {
@Output(doc="output bai file") var bai = swapExt(outBam, ".bam", ".bai")
this.input_file :+= inBams this.input_file :+= inBams
this.targetIntervals = tIntervals this.targetIntervals = tIntervals
this.out = outBam this.out = outBam