slightly improved error message printed upon failure to parse interval list file

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@895 348d0f76-0448-11de-a6fe-93d51630548a
2009-06-04 18:24:43 +00:00 · 2009-06-04 18:24:43 +00:00 · 4d654f30d4
parent bcc7bacba1
commit 4d654f30d4
1 changed files with 1 additions and 0 deletions
--- a/java/src/org/broadinstitute/sting/utils/GenomeLoc.java
+++ b/java/src/org/broadinstitute/sting/utils/GenomeLoc.java
@ -594,6 +594,7 @@ public class GenomeLoc implements Comparable<GenomeLoc>, Cloneable {
                ret = parseGenomeLocs(locStr);
                return ret;
            } catch (Exception e2) {
+            	logger.error("Attempt to parse interval file in GATK format failed: "+e2.getMessage());
                e2.printStackTrace();
                throw new StingException("Unable to parse out interval file in either format", e);
            }