zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Merged bug fix from Stable into Unstable

This commit is contained in:
Eric Banks 2012-08-29 15:13:56 -04:00
parent ce55ba98f4 150a969279
commit 4d38befe86
1 changed files with 2 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
public/java/src/org/broadinstitute/sting/gatk/walkers/indels/SomaticIndelDetector.java
View File

@ -1181,10 +1181,10 @@ public class SomaticIndelDetector extends ReadWalker<Integer,Integer> {
if ( event_length == 0 ) { // insertion
l.add( Allele.create(referencePaddingBase,true) );
l.add( Allele.create(referencePaddingBase + call.getVariant().getBases(), false ));
l.add( Allele.create((char)referencePaddingBase + new String(call.getVariant().getBases()), false ));
} else { //deletion:
l.add( Allele.create(referencePaddingBase + call.getVariant().getBases(), true ));
l.add( Allele.create((char)referencePaddingBase + new String(call.getVariant().getBases()), true ));
l.add( Allele.create(referencePaddingBase,false) );
}
}