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No longer supporting YAML file allows us to delete 75% of the sample's codebase

This commit is contained in:
Mark DePristo 2011-09-29 09:43:31 -04:00
parent 1b45f21774
commit 4d31673cc5
4 changed files with 0 additions and 169 deletions
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30
public/java/src/org/broadinstitute/sting/gatk/datasources/sample/PropertyDefinition.java
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@ -1,30 +0,0 @@
package org.broadinstitute.sting.gatk.datasources.sample;
/**
* Created by IntelliJ IDEA.
* User: brett
* Date: Aug 12, 2010
* Time: 2:09:16 PM
*/
public class PropertyDefinition {
String property;
String[] values;
public String getProperty() {
return property;
}
public void setProperty(String property) {
this.property = property;
}
public String[] getValues() {
return values;
}
public void setValues(String[] values) {
this.values = values;
}
}

31
public/java/src/org/broadinstitute/sting/gatk/datasources/sample/SampleAlias.java
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@ -1,31 +0,0 @@
package org.broadinstitute.sting.gatk.datasources.sample;
/**
* Created by IntelliJ IDEA.
* User: brett
* Date: Aug 13, 2010
* Time: 5:13:46 PM
*/
public class SampleAlias {
String mainId;
String[] otherIds;
public String getMainId() {
return mainId;
}
public void setMainId(String mainId) {
this.mainId = mainId;
}
public String[] getOtherIds() {
return otherIds;
}
public void setOtherIds(String[] otherIds) {
this.otherIds = otherIds;
}
}

65
public/java/src/org/broadinstitute/sting/gatk/datasources/sample/SampleFileParser.java
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@ -1,65 +0,0 @@
package org.broadinstitute.sting.gatk.datasources.sample;
/**
* Created by IntelliJ IDEA.
* User: brett
* Date: Aug 12, 2010
* Time: 1:30:44 PM
*/
public class SampleFileParser {
private SampleAlias[] sampleAliases;
private String[] allowedProperties;
private String[] allowedRelationships;
private PropertyDefinition[] propertyDefinitions;
private SampleParser[] samples;
public PropertyDefinition[] getPropertyDefinitions() {
return propertyDefinitions;
}
public void setPropertyDefinitions(PropertyDefinition[] propertyDefinitions) {
this.propertyDefinitions = propertyDefinitions;
}
public SampleFileParser() {
}
public String[] getAllowedProperties() {
return allowedProperties;
}
public void setAllowedProperties(String[] allowedProperties) {
this.allowedProperties = allowedProperties;
}
public SampleParser[] getSamples() {
return samples;
}
public void setSamples(SampleParser[] samples) {
this.samples = samples;
}
public String[] getAllowedRelationships() {
return allowedRelationships;
}
public void setAllowedRelationships(String[] allowedRelationships) {
this.allowedRelationships = allowedRelationships;
}
public SampleAlias[] getSampleAliases() {
return sampleAliases;
}
public void setSampleAliases(SampleAlias[] sampleAliases) {
this.sampleAliases = sampleAliases;
}
}

43
public/java/src/org/broadinstitute/sting/gatk/datasources/sample/SampleParser.java
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@ -1,43 +0,0 @@
package org.broadinstitute.sting.gatk.datasources.sample;
import java.util.HashMap;
/**
* Created by IntelliJ IDEA.
* User: brett
* Date: Aug 13, 2010
* Time: 2:09:43 PM
*/
public class SampleParser {
private String id;
private HashMap<String, Object> properties;
private HashMap<String, String> relationships;
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public HashMap<String, Object> getProperties() {
return properties;
}
public void setProperties(HashMap<String, Object> properties) {
this.properties = properties;
}
public HashMap<String, String> getRelationships() {
return relationships;
}
public void setRelationships(HashMap<String, String> relationships) {
this.relationships = relationships;
}
}