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Updating RR integration tests 

Forgot to update the integration tests after merging DEV-117 with optimizations from GATK main repo.
This commit is contained in:
Mauricio Carneiro 2012-10-23 11:26:26 -04:00
parent c210b7cde4
commit 4cd1a92358
1 changed files with 7 additions and 7 deletions
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14
protected/java/test/org/broadinstitute/sting/gatk/walkers/compression/reducereads/ReduceReadsIntegrationTest.java
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@ -26,28 +26,28 @@ public class ReduceReadsIntegrationTest extends WalkerTest {
@Test(enabled = true)
public void testDefaultCompression() {
RRTest("testDefaultCompression ", L, "1f95f3193bd9f120a73c34a0087abaf6");
RRTest("testDefaultCompression ", L, "46ea88e32bae3072f5cd68a0db4b55f1");
}
@Test(enabled = true)
public void testMultipleIntervals() {
String intervals = "-L 20:10,100,000-10,100,500 -L 20:10,200,000-10,200,500 -L 20:10,300,000-10,300,500 -L 20:10,400,000-10,500,000 -L 20:10,500,050-10,500,060 -L 20:10,600,000-10,600,015 -L 20:10,700,000-10,700,110";
RRTest("testMultipleIntervals ", intervals, "79213d6ac68d56d4d72dcf511223e424");
RRTest("testMultipleIntervals ", intervals, "c3784a0b42f5456b705f9b152a4b697a");
}
@Test(enabled = true)
public void testHighCompression() {
RRTest("testHighCompression ", " -cs 10 -minvar 0.3 -mindel 0.3 " + L, "dab2aa8e3655139974bbe12a568363d9");
RRTest("testHighCompression ", " -cs 10 -minvar 0.3 -mindel 0.3 " + L, "e385eb0ae5768f8507671d5303a212d5");
}
@Test(enabled = true)
public void testLowCompression() {
RRTest("testLowCompression ", " -cs 30 -minvar 0.01 -mindel 0.01 -minmap 5 -minqual 5 " + L, "7c9b4a70c2c90b0a995800aa42852e63");
RRTest("testLowCompression ", " -cs 30 -minvar 0.01 -mindel 0.01 -minmap 5 -minqual 5 " + L, "6b5546be9363e493b9838542f5dc8cae");
}
@Test(enabled = true)
public void testIndelCompression() {
RRTest("testIndelCompression ", " -cs 50 -L 20:10,100,500-10,100,600 ", "1255245ed4ebeacda90f0dbb4e4da081");
RRTest("testIndelCompression ", " -cs 50 -L 20:10,100,500-10,100,600 ", "f6c9ea83608f35f113cf1f62a77ee6d0");
}
@Test(enabled = true)
@ -67,7 +67,7 @@ public class ReduceReadsIntegrationTest extends WalkerTest {
@Test(enabled = true)
public void testAddingReadAfterTailingTheStash() {
String base = String.format("-T ReduceReads %s -npt -R %s -I %s", STASH_L, REF, STASH_BAM) + " -o %s ";
executeTest("testAddingReadAfterTailingTheStash", new WalkerTestSpec(base, Arrays.asList("4b590269cbe3574dbdd5bdc2bc6f5f1c")));
executeTest("testAddingReadAfterTailingTheStash", new WalkerTestSpec(base, Arrays.asList("647b0f0f95730de8e6bc4f74186ad4df")));
}
/**
@ -77,7 +77,7 @@ public class ReduceReadsIntegrationTest extends WalkerTest {
@Test(enabled = true)
public void testDivideByZero() {
String base = String.format("-T ReduceReads %s -npt -R %s -I %s", DIVIDEBYZERO_L, REF, DIVIDEBYZERO_BAM) + " -o %s ";
executeTest("testDivideByZero", new WalkerTestSpec(base, Arrays.asList("d8d066304f7c187f182bfb50f39baa0c")));
executeTest("testDivideByZero", new WalkerTestSpec(base, Arrays.asList("2c87985972dd43ee9dd50b463d93a511")));
}
@Test(enabled = true)