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LocusShardDataProvider doesn't need its own GenomeLocParser

This commit is contained in:
Joel Thibault 2012-12-21 15:14:50 -05:00
parent ffbd4d85f2
commit 4cc372f53b
1 changed files with 0 additions and 6 deletions
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6
public/java/src/org/broadinstitute/sting/gatk/datasources/providers/LocusShardDataProvider.java
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@ -22,11 +22,6 @@ public class LocusShardDataProvider extends ShardDataProvider {
*/ */
private final ReadProperties sourceInfo; private final ReadProperties sourceInfo;
/**
* The parser, used to create and build new GenomeLocs.
*/
private final GenomeLocParser genomeLocParser;
/** /**
* The particular locus for which data is provided. Should be contained within shard.getGenomeLocs(). * The particular locus for which data is provided. Should be contained within shard.getGenomeLocs().
*/ */
@ -45,7 +40,6 @@ public class LocusShardDataProvider extends ShardDataProvider {
public LocusShardDataProvider(Shard shard, ReadProperties sourceInfo, GenomeLocParser genomeLocParser, GenomeLoc locus, LocusIterator locusIterator, IndexedFastaSequenceFile reference, Collection<ReferenceOrderedDataSource> rods) { public LocusShardDataProvider(Shard shard, ReadProperties sourceInfo, GenomeLocParser genomeLocParser, GenomeLoc locus, LocusIterator locusIterator, IndexedFastaSequenceFile reference, Collection<ReferenceOrderedDataSource> rods) {
super(shard,genomeLocParser,reference,rods); super(shard,genomeLocParser,reference,rods);
this.sourceInfo = sourceInfo; this.sourceInfo = sourceInfo;
this.genomeLocParser = genomeLocParser;
this.locus = locus; this.locus = locus;
this.locusIterator = locusIterator; this.locusIterator = locusIterator;
} }