From 4ca1da1d07d85b687a050914009f319aaa550387 Mon Sep 17 00:00:00 2001 From: rpoplin Date: Mon, 20 Dec 2010 14:53:10 +0000 Subject: [PATCH] Updating the NA12878.HiSeq bam file to be the correct bam file in the methods development qscript. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4879 348d0f76-0448-11de-a6fe-93d51630548a --- scala/qscript/rpoplin/MethodsDevelopmentCallingPipeline.scala | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scala/qscript/rpoplin/MethodsDevelopmentCallingPipeline.scala b/scala/qscript/rpoplin/MethodsDevelopmentCallingPipeline.scala index 26fa8ce61..971a9c221 100755 --- a/scala/qscript/rpoplin/MethodsDevelopmentCallingPipeline.scala +++ b/scala/qscript/rpoplin/MethodsDevelopmentCallingPipeline.scala @@ -34,7 +34,7 @@ class MethodsDevelopmentCallingPipeline extends QScript { // Define the target datasets here def lowPass = true val HiSeq = new Target("NA12878.HiSeq", hg18, "hg18", - new File("/humgen/gsa-hpprojects/NA12878Collection/bams/NA12878.GA2.WGS.bwa.cleaned.bam"), + new File("/humgen/gsa-hpprojects/NA12878Collection/bams/NA12878.HiSeq.WGS.bwa.cleaned.recal.bam"), new File("/home/radon01/depristo/work/oneOffProjects/1000GenomesProcessingPaper/wgs.v13/HiSeq.WGS.cleaned.ug.snpfiltered.indelfiltered.vcf"), "/humgen/1kg/processing/pipeline_test_bams/whole_genome_chunked.hg18.intervals", 2.07, !lowPass) val WEx = new Target("NA12878.WEx", hg18, "hg18",